Experimental Methods

GIT1 phosphorylation site summary


Peptides - git1_imac_inhib.aln

                   10        20        30        40        50        60        70        80        90       100
GIT1_HUM   msrkgprAEVCADCSAPDPGWASISRGVLVCDECCSVHRslGRHISIVKHLrHSAWPPTLLQMVHTLASNGANSIWEHSLLDPAQVQSGRRKANPQDKVH
All Expts                                                                                                      
IMAC_INHIB                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   

                  110       120       130       140       150       160       170       180       190       200
GIT1_HUM   PIKSEFIRAKYQMLAFVHKLPCRDDDGVTAKdlskqlhssvrTGNLETCLRLLSLGAQANFFHPEKGTTPLHVAAKAGQTLQAELLVVYGADPGSPDVNG
All Expts                                                                                                      
IMAC_INHIB                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   

                  210       220       230       240       250       260       270       280       290       300
GIT1_HUM   RTPIDYARQAGHHELAERLVECQYELTDRLAFYlcgrKPDHKNGHYIIPQMADRsrQKCMSQSLDLSELAKaakKKLQALSNRLFEELAMDVYDEVDRRE
All Expts                                               *              *                               *       
IMAC_INHIB                                              *                                              *                                                                                                                                                                                                                                                                                                                                                                               
                                                     NGHYIIPQMADR                                                                                                                                                                                                                                                                                                                                                                                                                      
                                                                                              LFEELAMDVYDEVDRR                                                                                                                                                                                                                                                                                                                                                                         

                  310       320       330       340       350       360       370       380       390       400
GIT1_HUM   NDAVWLATQNHSTLVTERSAVPFLPVNPEYSATRnqgrqklarfnarEFATLIIDILSEAKRrqqgkSLSSPTDNLELSLRSQSDLDDQHDYDSVASDED
All Expts                                                                       [* *     ?  [ *       * *  *   
IMAC_INHIB                                                                       *          [ *       * *  *                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
                                                                    SEAKRRQQGKSLSSPTDNLEL                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
                                                                                            SQSDLDDQHDYDSVASDED                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        

                  410       420       430       440       450       460       470       480       490       500
GIT1_HUM   TDQEPLRstgatrsnrARSMDSSDVSDGAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRRLQREIHKLQAKNLQLRQPPGPVPTPPLPSERAEHT
All Expts  *                 *  []  ]                                                              *           
IMAC_INHIB *                 *  []                                 []                              *                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                           ARSMDSSDVSDGAVTLQEYLELKK                                         QPPGPVPTPPLPSER                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
           TDQEPLR                                              KVNSSLSDEL                                 AEHT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          

                  510       520       530       540       550       560       570       580       590       600
GIT1_HUM   PMAPGGSTHRrDRQAFSMYEPGSALKPFGGPPGDELTTRLQPFHSTELEDDAIYSVHVPAGLYRIRKGVSASAVPFtpssplpscsqegsrHTSKLSRHG
All Expts        []        [ *                         *]       **       *        *                     [  ]   
IMAC_INHIB       []          *                         *        *]       *        *                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
                        QAFSMYEPGSALKPFGGPPGDELTTR                         IRKGVSASAVPF                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
           PMAPGGSTHR                             LQPFHSTELEDDAIYSVHVPAGLYR                                  HG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  

                  610       620       630       640       650       660       670       680       690       700
GIT1_HUM   SGADSDYENTQSGDPLLGLEGKrFLELGKEEDFHPELESLDGDLDPGLPSTEDVILKTEQVTKNIQELLRAAQEFKHDSFVPCSEKIHLAVTEMASLFPK
All Expts  *   * *  *                            *                                                             
IMAC_INHIB *   * *                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
           SGADSDYENTQSGDPLLGLEGKR                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 

                  710       720       730       740       750       760       770       780
GIT1_HUM   RPALEPVRSSLRLLNASAYRlqsecrKTVPPEPGAPVDFQLLTQQVIQCAYDIAKaakQLVTITTRekKQSTDYKDDDDK
All Expts          []                                                            *         
IMAC_INHIB         []                                                            *                                                                                                                                                                                                                                                                                                                                                                                                                                             
           RPALEPVRSSLR                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
                                                                               KQSTDYKDDDDK                                                                                                                                                                                                                                                                                                                                                                                                                                    


Legend
*Phosphorylated sites are denoted by an asterisk below the amino acid residue.
[ ] The specific phosphorylated amino acid between the brackets can not be distinguished by the MS/MS spectra.
All Expts A summary of all phosphorylation sites detected on this molecule from all experiments.
C18_INHIB, C18,
IMAC_INHIB, IMAC
Analysis type.
Alternating, aligned peptides represent protein coverage for this experiment
Lower case amino acids have yet to be detected in any enzymatic digest analyzed by mass spectrometry.


GIT-FLAG - (IMAC +inhib)

Data reflects multiple analyses of multiple sample preps

1-1.5e7 HEK cells were transiently transfected with 3.5 ug GIT1-FLAG DNA. 1 mM peroxovandate pretreatment (no Calyculin A) of cells for 30 min prior to lysis. Immunoprecipitation (IP) was with 80 uL anti-FLAG IgG agarose beads slurry. 10-15% of the IP was used to visualize purity by silver-stained gel. GIT1 was either eluted with 100 uL of 0.2 mg/mL DYKDDDDK or left on-beads. Eluted GIT1 (corresponding to ca. 8% of the original IP) was reduced with DTT and alkylated with iodoacetamide in 100 mM ammonium bicarbonate and digested with either 500 ng trypsin, chymotrypsin, or a dual trypsin/chymotrypsin digest. Generally, 10X more peptide than was used for RP separation was converted to methyl esters. Phosphopeptide methyl esters were enriched by IMAC followed by reverse phase separation of peptides over a 1 hr gradient coupled with online detection of phosphopeptides by ESI tandem mass spectrometry (Thermo Electron, LCQ XP).