Experimental Methods

GIT1 phosphorylation site summary


Peptides - git1_c18_inhib.aln

                   10        20        30        40        50        60        70        80        90       100
GIT1_HUM   msrkgprAEVCADCSAPDPGWASISRGVLVCDECCSVHRslGRHISIVKHLrHSAWPPTLLQMVHTLASNGANSIWEHSLLDPAQVQSGRRKANPQDKVH
All Expts                                                                                                      
C18_INHIB                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
                  AEVCADCSAPDPGWASISR                         RHSAWPPTLL                              KANPQDKVH                                                                                                                                                                                                                                                                                                                                                                                                                                    
                                                    GRHISIVKHL              TLASNGANSIWEHSLLDPAQVQSGR                                                                                                                                                                                                                                                                                                                                                                                                                                              

                  110       120       130       140       150       160       170       180       190       200
GIT1_HUM   PIKSEFIRAKYQMLAFVHKLPCRDDDGVTAKdlskqlhssvrTGNLETCLRLLSLGAQANFFHPEKGTTPLHVAAKAGQTLQAELLVVYGADPGSPDVNG
All Expts                                                                                                      
C18_INHIB                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
           PIK                LPCRDDDGVTAK                    LLSLGAQANFFHPEK          AGQTLQAELLVVY                                                                                                                                                                                                                                                                                                                                                                                                                                               
                     YQMLAF                          TGNLETCLR               GTTPLHVAAK             GADPGSPDVNG                                                                                                                                                                                                                                                                                                                                                                                                                                    

                  210       220       230       240       250       260       270       280       290       300
GIT1_HUM   RTPIDYARQAGHHELAERLVECQYELTDRLAFYlcgrKPDHKNGHYIIPQMADRsrQKCMSQSLDLSELAKaakKKLQALSNRLFEELAMDVYDEVDRRE
All Expts                                               *              *                               *       
C18_INHIB                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
                 ARQAGHHELAERLVECQY                  NGHYIIPQMADR                             LFEELAMDVYDEVDRR                                                                                                                                                                                                                                                                                                                                                                         
           RTPIDY                  ELTDRLAFY                           SQSLDLSELAKAAK                                                                                                                                                                                                                                                                                                                                                                                                  

                  310       320       330       340       350       360       370       380       390       400
GIT1_HUM   NDAVWLATQNHSTLVTERSAVPFLPVNPEYSATRnqgrqklarfnarEFATLIIDILSEAKRrqqgkSLSSPTDNLELSLRSQSDLDDQHDYDSVASDED
All Expts                                                                       [* *     ?  [ *       * *  *   
C18_INHIB                                                                        *                    *    *                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
                             SAVPFLPVNPEYSATR                                 SLSSPTDNLELSLR                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
                LATQNHSTLVTER                             EFATLIIDILSEAKR                   SQSDLDDQHDYDSVASDED                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        

                  410       420       430       440       450       460       470       480       490       500
GIT1_HUM   TDQEPLRstgatrsnrARSMDSSDVSDGAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRRLQREIHKLQAKNLQLRQPPGPVPTPPLPSERAEHT
All Expts  *                 *  []  ]                                                              *           
C18_INHIB                    *                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
                        SNRARSMDSSDVSDGAVTLQEY                  KVNSSLSDELR                 QPPGPVPTPPLPSER                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
           TDQEPLR                               KKALATSEAKVQQLM                       NLQLR               AEHT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          

                  510       520       530       540       550       560       570       580       590       600
GIT1_HUM   PMAPGGSTHRrDRQAFSMYEPGSALKPFGGPPGDELTTRLQPFHSTELEDDAIYSVHVPAGLYRIRKGVSASAVPFtpssplpscsqegsrHTSKLSRHG
All Expts        []        [ *                         *]       **       *        *                     [  ]   
C18_INHIB                    *                                  *                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
                           SMYEPGSALKPFGGPPGDELTTR                                                         SRHG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
           PMAPGGSTHR                             LQPFHSTELEDDAIYSVHVPAGLYR                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      

                  610       620       630       640       650       660       670       680       690       700
GIT1_HUM   SGADSDYENTQSGDPLLGLEGKrFLELGKEEDFHPELESLDGDLDPGLPSTEDVILKTEQVTKNIQELLRAAQEFKHDSFVPCSEKIHLAVTEMASLFPK
All Expts  *   * *  *                            *                                                             
C18_INHIB  *   * *                               *                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
           SGADSDYENTQSGDPLLGLEGKR                                        NIQELLR                IHLAVTEMASLFPK                                                                                                                                                                                                                                                                                                                                                                                                                                    
                                  FLELGKEEDFHPELESLDGDLDPGLPSTEDVILKTEQVTK             HDSFVPCSEK                                                                                                                                                                                                                                                                                                                                                                                                                                                  

                  710       720       730       740       750       760       770       780
GIT1_HUM   RPALEPVRSSLRLLNASAYRlqsecrKTVPPEPGAPVDFQLLTQQVIQCAYDIAKaakQLVTITTRekKQSTDYKDDDDK
All Expts          []                                                            *         
C18_INHIB                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
                      RLLNASAY                       TQQVIQCAY                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
           RPALEPVR                  KTVPPEPGAPVDFQLL         DIAKAAKQL                                                                                                                                                                                                                                                                                                                                                                                                                                                        


Legend
*Phosphorylated sites are denoted by an asterisk below the amino acid residue.
[ ] The specific phosphorylated amino acid between the brackets can not be distinguished by the MS/MS spectra.
All Expts A summary of all phosphorylation sites detected on this molecule from all experiments.
C18_INHIB, C18,
IMAC_INHIB, IMAC
Analysis type.
Alternating, aligned peptides represent protein coverage for this experiment
Lower case amino acids have yet to be detected in any enzymatic digest analyzed by mass spectrometry.


GIT-FLAG (C18 +inhib)

Data reflects multiple analyses of multiple sample preps

1-1.5e7 HEK cells were transiently transfected with 3.5 ug GIT1-FLAG DNA. 1 mM peroxovandate pretreatment (no Calyculin A) of cells for 30 min prior to lysis. Immunoprecipitation (IP) was with 80 uL anti-FLAG IgG agarose beads slurry. 10-15% of the IP was used to visualize purity by silver-stained gel. GIT1 was either eluted with 100 uL of 0.2 mg/mL DYKDDDDK or left on-beads. Eluted GIT1 (corresponding to ca. 8% of the original IP) was reduced with DTT and alkylated with iodoacetamide in 100 mM ammonium bicarbonate and digested with either 500 ng trypsin, chymotrypsin, or a dual trypsin/chymotrypsin digest. Online reverse phase (RP) separation an aliquot of the digest corresponding to ca. 1% of the original immunoprecipitated GIT1 occurred over a 2 hr gradient. On-beads GIT1 (corresponding to 30% of the original IP) was digested with 500 ng trypsin. Online reverse phase (RP) C18 separation of an aliquot of the on-beads digest corresponding to ca. 0.3% of the original immunoprecipitated GIT1 occurred over a 1.5 hr gradient coupled with online detection of phosphopeptides by ESI tandem mass spectrometry (Thermo Electron, LCQ XP).